Geology topics

Andrew M. Latimer

Publications and source records attributed to Andrew M. Latimer.

6 recordsLinked to original sources

USGS2026

Estimating basal area change by tree size with Sentinel-2 imagery following four fires in California, USA

Background Failure to account for tree size when estimating burn severity may not accurately capture post-fire tree mortality and post-fire forest structure. Aims We explored whether basal area mortality by tree size class could be determined from remotely-sensed burn severity indices based solely on Sentinel-2 satellite imagery. Methods We used data collected in four large California wildfires to model the relationship between proportional basal area mortality and burn severity indices derived from Sentinel-2 imagery for three tree diameter class thresholds: small (15 to 30 cm), medium (30 to 50 cm) and large (>50 cm). Key results Our models showed that for a given burn severity index value, the proportion of mortality was greater overall in smaller trees, and that the proportion of mortality in large trees changed more slowly than that of smaller trees with changing burn severity index values. Conclusions We found that models that accounted for tree size can more precisely estimate changes in forest size structure than a similar model that did not account for tree size. Implications Explicitly accounting for tree size can improve estimates of post-fire forest structure, including for large trees which make up the bulk of stand biomass and post-fire seed sources.

California↗

USGS2026

Quantifying post-fire live tree presence and spatial variation using Sentinel-2 time series

Accurate mapping of post-fire surviving trees is important for tracking forest recovery and prioritizing land management decisions. Satellite-based remote sensing is an effective method to assess post-fire forest conditions. Traditionally, differenced satellite-derived burn severity indices are computed by differencing one year pre- and post-fire spectral reflectance values. Differenced burn severity indices are useful for quantifying and mapping the magnitude of ecological change, but their application to detecting and mapping post-fire live trees may not be as appropriate, particularly for delayed tree mortality. Delayed tree mortality (“delayed mortality”) is a phenomenon where trees that initially survive fire then die over an extended period (between one and five years), and it can be challenging to measure and predict. In this study, we demonstrate the potential of mapping delayed mortality using readily available remotely sensed imagery alone. We used random forest models to detect post-fire live trees using 10-m resolution Sentinel-2 data at one-, three-, and five-years post-fire for four fires in the southern Sierra Nevada, California, USA. Using imagery from the National Agriculture Imagery Program (NAIP; 60-cm resolution), we manually classified live tree presence in 6000 Sentinel-2 pixels (500 pixels for each fire-year combination) to calibrate and validate models. Sentinel-2 based model accuracies ranged from 65 % to 86 % with F-scores ranging from 0.52 to 0.86, and their predictions of live pixel area were on average 44 % lower than inferred from more traditional indices such as relative differenced normalized burn ratio (RdNBR). This work represents a promising first step in using freely available post-fire spectral reflectance imagery to detect live trees over an extended period to support post-fire management.

California↗

USGS2025

Sentinel imagery detects the presence of live trees following large wildfires in California

Identifying live tree presence following wildfire is important for burn damage assessments and decision making, as these trees serve as seed sources for recovery. Satellite-based remote sensing offers an efficient means to assess burn severity with products representing vegetation greenness and char/ash presence and their change from pre- to post-fire imagery. While effective at assessing burn severity (e.g. ecosystem change), there remain limitations in identifying fire refugia (surviving trees), due to the difficulty of teasing apart different green vegetation types (e.g. trees, shrubs, grasses). In this paper, we use 10 m Sentinel-2 satellite data to predict live tree presence across three sites impacted by the 2021 California fire season. We used vegetation indices (VIs) from post-fire imagery (normalized difference vegetation index [NDVI], normalized burn ratio [NBR], normalized difference water index [NDWI], visible atmospherically resistant index [VARI], and burn area index [BAI]), differential VIs from pre- and post-fire imagery (dNDVI, dNBR, RdNBR, dNDWI, dVARI), and direct reflectance bands (all bands model; visible, near-infrared, and shortwave infrared; B1–B12) to predict live tree presence via random forest modeling. To calibrate and validate the random forest models, we photointerpreted ∼2300 pixels per fire region using 2022 National Agriculture Imagery Program imagery. We performed additional field-based validation using tree presence/absence data two years post-fire ( n = 296 observations across two sites). At the site level, the all bands model outperformed the vegetation index-based models (80%–85% vs 65%–79% accuracy). Errors were mainly false positives attributed to pixels with green understory vegetation but no live trees. In cross-site inference, which involved pooling two sites for model calibration to test on the third site, the all bands model retained good performance (76%–81% accuracy). Evaluation against field survey data demonstrated a larger range of performance (50%–87% accuracy) that highlights limitations based on tree isolation and crown percent greenness. Relative to differential-based VIs, our results highlight potential advantages of using post-fire Sentinel-2 imagery and random forest modeling for identifying live tree presence and scaling to full fire extents.

California↗

USGS2023

The energy–water limitation threshold explains divergent drought responses in tree growth, needle length, and stable isotope ratios

Predicted increases in extreme droughts will likely cause major shifts in carbon sequestration and forest composition. Although growth declines during drought are widely documented, an increasing number of studies have reported both positive and negative responses to the same drought. These divergent growth patterns may reflect thresholds (i.e., nonlinear responses) promoted by changes in the dominant climatic constraints on tree growth. Here we tested whether stemwood growth exhibited linear or nonlinear responses to temperature and precipitation and whether stemwood growth thresholds co-occurred with multiple thresholds in source and sink processes that limit tree growth. We extracted 772 tree cores, 1398 needle length records, and 1075 stable isotope samples from 27 sites across whitebark pine's ( Pinus albicaulis Engelm.) climatic niche in the Sierra Nevada. Our results indicated that a temperature threshold in stemwood growth occurred at 8.4°C (7.12–9.51°C; estimated using fall-spring maximum temperature). This threshold was significantly correlated with thresholds in foliar growth, as well as carbon (δ 13 C) and nitrogen (δ 15 N) stable isotope ratios, that emerged during drought. These co-occurring thresholds reflected the transition between energy- and water-limited tree growth (i.e., the E–W limitation threshold). This transition likely mediated carbon and nutrient cycling, as well as important differences in growth-defense trade-offs and drought adaptations. Furthermore, whitebark pine growing in energy-limited regions may continue to experience elevated growth in response to climate change. The positive effect of warming, however, may be offset by growth declines in water-limited regions, threatening the long-term sustainability of the recently listed whitebark pine species in the Sierra Nevada.

Global Change Biology↗

USGS2021

Nonlinear shifts in infectious rust disease due to climate change

Range shifts of infectious plant disease are expected under climate change. As plant diseases move, emergent abiotic-biotic interactions are predicted to modify their distributions, leading to unexpected changes in disease risk. Evidence of these complex range shifts due to climate change, however, remains largely speculative. Here, we combine a long-term study of the infectious tree disease, white pine blister rust, with a six-year field assessment of drought-disease interactions in the southern Sierra Nevada. We find that climate change between 1996 and 2016 moved the climate optimum of the disease into higher elevations. The nonlinear climate change-disease relationship contributed to an estimated 5.5 (4.4–6.6) percentage points (p.p.) decline in disease prevalence in arid regions and an estimated 6.8 (5.8–7.9) p.p. increase in colder regions. Though climate change likely expanded the suitable area for blister rust by 777.9 (1.0–1392.9) km 2 into previously inhospitable regions, the combination of host-pathogen and drought-disease interactions contributed to a substantial decrease (32.79%) in mean disease prevalence between surveys. Specifically, declining alternate host abundance suppressed infection probabilities at high elevations, even as climatic conditions became more suitable. Further, drought-disease interactions varied in strength and direction across an aridity gradient—likely decreasing infection risk at low elevations while simultaneously increasing infection risk at high elevations. These results highlight the critical role of aridity in modifying host-pathogen-drought interactions. Variation in aridity across topographic gradients can strongly mediate plant disease range shifts in response to climate change.

California↗

USGS2020

The Fire and Tree Mortality Database, for empirical modeling of individual tree mortality after fire

Wildland fires have a multitude of ecological effects in forests, woodlands, and savannas across the globe. A major focus of past research has been on tree mortality from fire, as trees provide a vast range of biological services. We assembled a database of individual-tree records from prescribed fires and wildfires in the United States. The Fire and Tree Mortality (FTM) database includes records from 164,293 individual trees with records of fire injury (crown scorch, bole char, etc.), tree diameter, and either mortality or top-kill up to ten years post-fire. Data span 142 species and 62 genera, from 409 fires occurring from 1981-2016. Additional variables such as insect attack are included when available. The FTM database can be used to evaluate individual fire-caused mortality models for pre-fire planning and post-fire decision support, to develop improved models, and to explore general patterns of individual fire-induced tree death. The database can also be used to identify knowledge gaps that could be addressed in future research.

Scientific Data↗